RNA Module API Documentation

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RNA Module API Documentation#

This document provides an overview of the RNA module, which includes classes and methods for handling GENCODE gene annotations, GTF files, and gene data.

Classes#

gencode.Gencode

A class to handle GENCODE gene annotations for different genome assemblies.

gtf.GTF

Base class for handling GTF annotation files

gene.Gene

A class to represent a gene with TSS information.

gene.TSS

A class to represent a transcription start site (TSS).

gene.GeneExp

A class to represent a gene with expression data.

gene.GeneSets

A collection of Genes, initialized from a list of Gene objects or Gene names
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