gcell.ontology.pathway.Pathways#
- class gcell.ontology.pathway.Pathways(gmt_file=None, assembly=None, gencode_version=None, annotation_dir=None, config=None)[source]#
A class to represent pathways loaded from a gmt file.
Methods
get_gene_sets(genes)Get GeneSets object from the list of genes.
query_pathway([query_str])Query a pathway using a string.