gcell.dna.motif.Motif

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gcell.dna.motif.Motif#

class gcell.dna.motif.Motif(id, gene_name, dbd, database, cluster_id, cluster_name, pfm)[source]#

Base class for TFBS motifs.

Parameters:
id str

The ID of the motif

gene_name str

The name of the gene

dbd str

The DNA binding domain of the motif

database str

The database the motif is from

cluster_id str

The ID of the cluster the motif is in

cluster_name str

The name of the cluster the motif is in

pfm str

The path to the PFM file

Methods

plot_logo([filename, format, size, ...])

plot seqlogo of motif using pfm file
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