gcell.cell.celltype.Celltype.gene_jacobian_summary#
- Celltype.gene_jacobian_summary(gene, axis='motif', multiply_input=True, stats='absmean')[source]#
Summarizes the Jacobian for a given gene.
This function calculates the Jacobian for a given gene and summarizes it based on the specified axis. If the axis is “motif”, it concatenates the Jacobian summaries along axis 1 and then sums them. If the axis is “region”, it concatenates the Jacobian summaries along axis 0, groups them by index, chromosome, and start, and then sums the scores.
- Parameters:
- gene
The gene for which the Jacobian is to be calculated.
- axis default:
'motif' The axis along which to summarize the Jacobian. Defaults to “motif”.
- multiply_input default:
True If True, the input is multiplied. Defaults to True.
- Returns:
pd.DataFrame: A DataFrame containing the summarized Jacobian.