gcell.rna.gtf.GTF#
- class gcell.rna.gtf.GTF(gtf_path, exclude_chrs=['chrM', 'chrY'])[source]#
Base class for handling GTF annotation files
Methods
get_exp_feather(peaks[, extend_bp])Get the expression data for the given peaks.
get_gene(gene_name)Get a Gene object for the given gene name.
get_gene_id(gene_id)Get a Gene object for the given gene ID.
get_genebodies([gene_names])Get the gene bodies for the given gene names.
get_genes(gene_names)Get a list of Gene objects for the given gene names.
query_region(chrom, start, end[, strand])Query the GTF for regions matching the given parameters.