gcell.protein.af2.AFPairseg

Contents

gcell.protein.af2.AFPairseg#

class gcell.protein.af2.AFPairseg(results_root_dir, fasta_root_dir, s3_file_sys=None)[source]#

Pass the base result directory name Gene1_Gene2. In the directory there are many subfolders like Gene1_1_Gene2_2. Each subfolder contains the AF2 result for the pair of segments between the two genes. The subfolder name is the name for AFResult. The segment corresponds to the low_and_high_plddt_region_sequence in the Protein class.

Methods

plot_plddt_gene1()

plot_plddt_gene2()

plot_score_heatmap()

plotly_plddt_gene1()

plotly_plddt_gene2()

Contents