gcell.cell.celltype.GETCellType.get_tf_exp_str#
- GETCellType.get_tf_exp_str(motif, m)[source]#
This method generates a formatted string of gene names and their corresponding predicted expression values. The expression values are averaged and sorted in descending order.
- Parameters:
- motif
The motif object containing the cluster gene list.
- m
The index to access the specific cluster gene list from the motif object.
- Returns:
- str: A string representation of gene names and their corresponding predicted expression values.
The string is formatted as ‘gene_name pred’, where ‘pred’ is a 2 digit floating point number. Each gene name and its corresponding predicted expression value are separated by a ‘<br />’.
Example: ‘gene1 1.23<br />gene2 0.56<br />gene3 0.45’