gcell.rna.gene.GeneExp

class gcell.rna.gene.GeneExp(name, id, chrom, strand, tss_list, exp_list, tes_list=None, gene_start=None, gene_end=None)

A class to represent a gene with expression data. Not very useful.

Attributes

genomic_range	Get the genomic range of the gene (start, end coordinates).
tes	Get the Transcription End Site (TES) coordinate for the gene.
tes_list	Get the TES list for the gene, constructed from tss_list if not provided.
tss	Get the TSS list for the gene.
tss_coordinate	Get the primary Transcription Start Site (TSS) coordinate for the gene.

Methods

get_tes_track(track[, upstream, downstream])	Get track data centered around the gene's Transcription End Site (TES).
get_tes_track_obj(track[, upstream, downstream])	Get Track object centered around the gene's Transcription End Site (TES).
get_track(track[, upstream, downstream])
get_track_obj(track[, upstream, downstream])
get_tss_track(track[, upstream, downstream])
get_tss_track_obj(track[, upstream, downstream])