gcell.dna.track.Track.plot_tracks#
- Track.plot_tracks(color_dict=None, gene_annot=None, genes_to_highlight=None, beds=None, out_file=None, center=False)[source]#
Plot the convolved tracks and optionally add gene annotations.
- Parameters:
- color_dict dict, optional
A dictionary mapping track labels to colors. Defaults to None.
- gene_annot Gencode, optional
A GTF object containing gene annotations. Defaults to None.
- genes_to_highlight list, optional
A list of gene names to highlight. Defaults to None.
- beds list, optional
A list of BED objects containing regions to plot. Defaults to None.
- out_file str, optional
The path to save the output plot. Defaults to None.