gcell.cell.celltype.GETHydraCellType.get_gene_by_motif

gcell.cell.celltype.GETHydraCellType.get_gene_by_motif#

GETHydraCellType.get_gene_by_motif(overwrite=False)[source]#

Calculate gene by motif data for hydra-based cell-type.

This method calculates the gene by motif data for a GETHydraCellType. It averages the jacobians across all TSS sites for each gene.

Parameters:

overwrite bool (default: False): Whether to overwrite existing data, by default False

Return type:

GeneByMotif

Returns:

GeneByMotif The gene by motif data.